Protein Info for RR42_RS16230 in Cupriavidus basilensis FW507-4G11

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 48 to 76 (29 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details amino acids 296 to 317 (22 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details TIGR04407: LPS export ABC transporter permease LptF" amino acids 2 to 347 (346 residues), 384.6 bits, see alignment E=1.7e-119 PF03739: LptF_LptG" amino acids 7 to 346 (340 residues), 183.1 bits, see alignment E=3.8e-58

Best Hits

KEGG orthology group: K07091, lipopolysaccharide export system permease protein (inferred from 89% identity to cti:RALTA_A2465)

Predicted SEED Role

"FIG000988: Predicted permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YD37 at UniProt or InterPro

Protein Sequence (374 amino acids)

>RR42_RS16230 permease (Cupriavidus basilensis FW507-4G11)
MIFQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGMAANGQASPNDVLMLIGLATIGYL
SILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFIIMSLLLGMFA
WPWANQQSALFRDRFEQRGVLSMIAAGRFIEPAKGNYVLFIEGIDADMKHARNVFVANAE
ADKIGVALAHQGQFQTMPNGDRMVVMENGRRYAGTPGKIDYRIVEFDQYAVKVDNKPPES
DANLPTKSRDTIDLLRNRTNENLGELLWRLSLPLLAFNFVLIAIPLAYVNPRLGRYTPLV
FAVLIYLTYSNVINLSQAWVRSGSIPFSLAWWPFHLIALLGAVMLFRYRQNRSLGGWRAV
FGLPRKGGARGTQA