Protein Info for RR42_RS16010 in Cupriavidus basilensis FW507-4G11

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 PF01883: FeS_assembly_P" amino acids 6 to 76 (71 residues), 85.3 bits, see alignment E=8e-28 PF10609: ParA" amino acids 97 to 339 (243 residues), 350.3 bits, see alignment E=1.6e-108 PF13614: AAA_31" amino acids 99 to 137 (39 residues), 37.1 bits, see alignment 9.5e-13 PF09140: MipZ" amino acids 100 to 217 (118 residues), 35.6 bits, see alignment E=2e-12 PF01656: CbiA" amino acids 101 to 268 (168 residues), 50.6 bits, see alignment E=5.7e-17

Best Hits

KEGG orthology group: K03593, ATP-binding protein involved in chromosome partitioning (inferred from 92% identity to reu:Reut_A0676)

Predicted SEED Role

"Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YCY1 at UniProt or InterPro

Protein Sequence (362 amino acids)

>RR42_RS16010 ATP-binding protein (Cupriavidus basilensis FW507-4G11)
MSLTVDQVTEVLRTVIDPNTGRDLVSTRSARNVRVEGGDVSLEVELGYPGKSQLEPIRKQ
VVDALRQLPGVANANVAVSMHIVAHAVQRGVKLLPGVKNVIAVASGKGGVGKSTTAVNLA
LALSAEGARVGMLDADIYGPSLPMMLGIDGRPESSDGQTMEPLEGHGLQANSIGFLIEQD
NPMVWRGPMVTSALEQLLRQTNWHDLDYLIVDMPPGTGDIQLTLSQKVPVTGAVIVTTPQ
DIALLDAKKGLKMFEKVGIPILGIVENMAVYCCPSCGHVEHIFGEGGGEKMCADYGVDLL
GSMPLNRSIREQADTGRPTVVSDPDSPIAELYRAMARKVAVKVADRARDMTSKFPSIVVQ
NT