Protein Info for RR42_RS15715 in Cupriavidus basilensis FW507-4G11

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 19 to 170 (152 residues), 35.9 bits, see alignment E=2.5e-12 PF13439: Glyco_transf_4" amino acids 19 to 171 (153 residues), 42.8 bits, see alignment E=1.5e-14 PF20706: GT4-conflict" amino acids 143 to 300 (158 residues), 46 bits, see alignment E=9.6e-16 PF00534: Glycos_transf_1" amino acids 185 to 339 (155 residues), 147.7 bits, see alignment E=6.3e-47 PF13692: Glyco_trans_1_4" amino acids 186 to 326 (141 residues), 138.5 bits, see alignment E=4.9e-44

Best Hits

KEGG orthology group: None (inferred from 66% identity to rme:Rmet_2721)

Predicted SEED Role

"Glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YCN7 at UniProt or InterPro

Protein Sequence (358 amino acids)

>RR42_RS15715 glycosyl transferase (Cupriavidus basilensis FW507-4G11)
MKPLPTLCFLTGTLNAFAGAERMTAVIANALAERGYPVLILSLWDERSCFTLHPDVVHEA
LFAQRPSFKRAYLATVNGIRRFVNRRHVDVLIEVDTMLTLFTLPATLGLKVRRIAWEHCH
FDEDLGKPARRFARRLAARFNEAVVVLTERDRQRWVEALAPRQPVIMIPNPLPFAFPPKA
SERVSKTVLAVGRLTHAKGFDILLRAWEKVTASQPDWRLVIVGEGEERSALEALIRDLGI
SNCVDMPGLHRNIEEVYRQAALFCLSSRYEGFALTLIEAMAFGLPIVSSDCETGPRELVR
NGSNGLLVPKEDSAALAAGLLRLVADPPLCAELANEARNSASGMAIAPVTERWQRLLQ