Protein Info for RR42_RS15695 in Cupriavidus basilensis FW507-4G11

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 111 to 127 (17 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 21 to 181 (161 residues), 103.2 bits, see alignment E=5.6e-33 PF13579: Glyco_trans_4_4" amino acids 22 to 180 (159 residues), 98.7 bits, see alignment E=1.6e-31 PF13477: Glyco_trans_4_2" amino acids 24 to 154 (131 residues), 38.9 bits, see alignment E=3.3e-13 PF20706: GT4-conflict" amino acids 173 to 349 (177 residues), 41.4 bits, see alignment E=3.5e-14 PF13692: Glyco_trans_1_4" amino acids 196 to 331 (136 residues), 113.3 bits, see alignment E=4e-36 PF00534: Glycos_transf_1" amino acids 196 to 344 (149 residues), 115 bits, see alignment E=9.9e-37 PF13524: Glyco_trans_1_2" amino acids 215 to 350 (136 residues), 26.6 bits, see alignment E=1.8e-09

Best Hits

KEGG orthology group: None (inferred from 65% identity to rme:Rmet_2717)

Predicted SEED Role

"putative transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YIM8 at UniProt or InterPro

Protein Sequence (385 amino acids)

>RR42_RS15695 glycosyl transferase (Cupriavidus basilensis FW507-4G11)
MPSPLPSHRPRIAFLITNSEIGGAQTHVADLLHALRDRIEPVLLAGGDGPLLDAARAAGA
RTIRLALLDNALSPLRALAALRELLKALRETAPDLIHAHSAKAGALGRVAGWLLGIPVVY
TVHGFAFKAAAPARQRLISRCMEWLLAPLAARLICVAQGERALAASLPIPAARVRVIRNG
IADSSARATPGAPLRRIVMVARLAAPKRADLLIRAFARAALPDCELVLAGVGPQMATLQS
LADNVAPGRVRFAGPVTDVPALLASAQAFALASDHEGFPLSVLEAMRAGLPVVASDLPGI
REQLDSGASGLLVAGDDEHAWTAALARLADNPTLRETLGRNARTRWAREFGLAPMADATW
TIYQQALAGKPGAARAAASTGAGGQ