Protein Info for RR42_RS14825 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 46 to 61 (16 residues), see Phobius details PF01145: Band_7" amino acids 42 to 184 (143 residues), 66.5 bits, see alignment E=3.2e-22 PF15975: Flot" amino acids 413 to 542 (130 residues), 136.5 bits, see alignment E=5.4e-44

Best Hits

Swiss-Prot: 77% identical to YQIK_ECOLI: Inner membrane protein YqiK (yqiK) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 77% identity to sek:SSPA2863)

Predicted SEED Role

"Inner membrane protein YqiK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YBY9 at UniProt or InterPro

Protein Sequence (601 amino acids)

>RR42_RS14825 membrane protein (Cupriavidus basilensis FW507-4G11)
MDSIIFWGVIGLAGVLGLCIIGLIFSRLYTRASAERAFVRTGLGGQKVIMSGGAIVLPVF
HEIIPINMNTLKLEVSRASRDSLITKDRMRVDVVVAFFVRVKPTVEGVSTAAQTLGQRTL
APESLRALVDDKFVDALRSTAAQMSMQDLQDAREQFVQGVQNTVAEDLTKNGLELESVSL
TNFNQTSKEFFDPNNAFDAEGLTKLTQETERRRKERNEVEQDTEVSVREKNRDALAKKLE
IEQQESFMKLEQEQQVKTRTAEQNARIASYEAERRQEAEQSRITAERQVQESEIQREQAV
RTRKVEAERDVRVKEIEQQRVTQMAAIEQAKVTEIAEQEKAIVIAAKSEAQSQAQGRANE
ALAEAVKAEQMVETTRHTAQADRAKQVALIEAAQEAETQAVHVTTQARAEREAAQMQATA
IVELAEAARKKGLAEAEAQRALNDAINALSSDQTSLKFKLALLQALPGVIQQSVEPMKAI
DGIKIIQVDGLNRGGTAATGDAGTGGGNGHGNGNLAEQAMSAALSYRAHAPLIDSLLKEV
GLAGGSLQGLVPGLAVGPAPGHAPTASHAEHGNDDAQVLPLKHANHAGNTSKIEPASGTG
N