Protein Info for RR42_RS13960 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 86 to 133 (48 residues), see Phobius details amino acids 140 to 162 (23 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 241 to 264 (24 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details PF03601: Cons_hypoth698" amino acids 29 to 348 (320 residues), 265.1 bits, see alignment E=3.4e-83 TIGR00698: conserved hypothetical protein" amino acids 30 to 362 (333 residues), 251.2 bits, see alignment E=7.8e-79

Best Hits

Swiss-Prot: 50% identical to Y1111_RALSO: UPF0324 membrane protein RSc1111 (RSc1111) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: None (inferred from 73% identity to reh:H16_A2540)

Predicted SEED Role

"Putative membrane protein YeiH" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YBI3 at UniProt or InterPro

Protein Sequence (367 amino acids)

>RR42_RS13960 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MSSIQSSAVANLGTEPPSWPTRVLTLVPLGFIAWLAMVFSAHPAVSRLGMSALTLAMFAG
MVAGNTLPQRWLIPLAPGMQLARQQLLRFGVALYGLRLTFGAIADLGLAGVLVPLAMLVS
TMLLGIWIGSSLLGLSRREAILVSAGSAVCGAAAAIAVASVVRTDDRQTAVAVATVVLFG
TAGMLLYPYLFELATQHWHLAISERTFGIYTGATLHEVAQVIASGKMVSDATADAAVVTK
MVRVLALGPLLLVLALWPKAGIGLAEDGKGENAAGGRPWGAILKAIPWFAVGFVAVMAVH
SAGLVPQDWKPALLAFDNWLLACAMLAIGLHTRIGTLLRAGRKPLVLAGLLFVFLVCGGA
LLCAAVA