Protein Info for RR42_RS13370 in Cupriavidus basilensis FW507-4G11

Annotation: microcin ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 537 PF00005: ABC_tran" amino acids 35 to 191 (157 residues), 104.3 bits, see alignment E=4.3e-33 amino acids 310 to 463 (154 residues), 122.1 bits, see alignment E=1.3e-38 PF08352: oligo_HPY" amino acids 242 to 268 (27 residues), 27.1 bits, see alignment (E = 2.2e-09) amino acids 514 to 535 (22 residues), 15.9 bits, see alignment (E = 7.1e-06)

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 88% identity to reu:Reut_A2126)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YDB8 at UniProt or InterPro

Protein Sequence (537 amino acids)

>RR42_RS13370 microcin ABC transporter ATP-binding protein (Cupriavidus basilensis FW507-4G11)
MQPVQAKGDAGGPLMCIERLSVTFGHGEDATRAVRDVSFDLRAGERFALVGESGSGKTVT
ALAMLRLVDDARYQGSVRFEGRDLLKVSEREMRGIRGADIAMIFQEPMTALNPLYTIGNQ
IVETLALHEGLDRRAARERAIALLERTGISDAAHRFDSFPHQLSGGQRQRAMIAMALACR
PKLLLADEPTTALDVTIRVQILELLRDLQAEFGMAVMLITHDLNLVRAFAQRVGVMEKGV
LVEVGETASVFAAPQHPYTRKLIDSRPRREVLPLVPLAPVLLEARGLCVNYARKRRGLAG
WFGRDQFAAVKDVNFSLREGETIGIVGESGSGKTTLAHAVLNLQRRSAGDIQFLGKSLDE
VSRRERSTLRSRLQVVFQDPFGSLSPRMTIEQIVGEGLALHQPGLSRDAMRQRVTEALRE
VGMDRTALGRYPHEFSGGQRQRVAIARVLILKPQVLVLDEPTSALDVSIQQQVLALLTQL
QRKYNLSYLFISHDLAVIRAMAHRVIVMKSGEVVEAGDTETVLGAPQHAYTRKLMIA