Protein Info for RR42_RS12965 in Cupriavidus basilensis FW507-4G11

Annotation: glycerol-3-phosphate transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 73 to 96 (24 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 203 to 227 (25 residues), see Phobius details amino acids 266 to 287 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 113 to 292 (180 residues), 54.1 bits, see alignment E=8.6e-19

Best Hits

Swiss-Prot: 65% identical to UGPA_RHIME: sn-glycerol-3-phosphate transport system permease protein UgpA (ugpA) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K05814, sn-glycerol 3-phosphate transport system permease protein (inferred from 89% identity to reu:Reut_A2051)

MetaCyc: 63% identical to sn-glycerol 3-phosphate ABC transporter membrane subunit UgpA (Escherichia coli K-12 substr. MG1655)
ABC-34-RXN [EC: 7.6.2.10]; 7.6.2.10 [EC: 7.6.2.10]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y403 at UniProt or InterPro

Protein Sequence (293 amino acids)

>RR42_RS12965 glycerol-3-phosphate transporter permease (Cupriavidus basilensis FW507-4G11)
MEKRVVFRSSWLPYLLVLPQMAVTLIFFFWPAGQALYQSVLRQDAFGIDLQFVGLENFRD
LFSDAQYLNAFRVTGVFAVGVTLVGLTVSLMLAYFADRVVRGASGYKMLLIWPYAVAPAV
AGVLWMFMFNPTLGVVSYALHRFGVDWNFLLNSNQAMLLVVLIAAWKQISYNFLFFLAGL
QSIPKSLIEAAAIDGAGPWRRFWSIIFPLLSPTTFFLMVINVVYAFFDTFAIIDAVTHGG
PVNATNTLVYKVYQDGFRGLDIGGSAAQSVVLMGIVIVLTVVQFRYVERKVQY