Protein Info for RR42_RS12120 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 22 to 23 (2 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details PF00512: HisKA" amino acids 482 to 546 (65 residues), 67.8 bits, see alignment 1.4e-22 PF02518: HATPase_c" amino acids 594 to 708 (115 residues), 90.4 bits, see alignment E=2.1e-29 PF00072: Response_reg" amino acids 842 to 951 (110 residues), 84.6 bits, see alignment E=1.1e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YA79 at UniProt or InterPro

Protein Sequence (1038 amino acids)

>RR42_RS12120 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MSLVPFVVIPLALMLAGTLCWGIFRVVEDQQERIDIHFSELTGYIREQEAFLIRLRTRVR
SLHPEDYTGDVKLRRIDSSAHGGVKLFEARVPSTSVMFSIACASTADCPATDSAVLRFGS
FFSDYYSTYWAASQQPAADAFLIAAHADASVRMPALRFTPENRPQEYGAVLSMVAQHAGT
HAGERDVASGAVSWLRADPAAGGAGKMLAVLPLDAAAARPRATESGNETLYAAALLSLDR
IGNIRGSPETPGYDDFWLEDKARTTLAGKTPLPASKADGVTFATDGLYFRLKDPKGAWHA
LYRISYPTFFRHNKGLPVLLALLVLLGLGGALSFVRWYNRRVVLPARQARERLAQADAFC
HALIETAPVALCIYSRADGAALFGNHLAKQWLNLDPGLDTHPDLQCVLDNPSQATQVLAA
ALPGTIGEIRGDGSRPLSLAFAPARYHGQAVLLCAFSDISARKETERALAKGGQDADSAS
AARTTFLASMSHEIRTPLYGVMGALELLELTSLGNVQGQYVQTIRNASEALMQIIGDVLD
IARIEARQLSVEAEDFCLLSLVEATISRHAASAGQKGLLLYACVAPELPERLRGDSVRIQ
QILNNLLCNAIKSTESGHVILRVRQVSADRDGATLRFQVVDTGVGIPQECQAELFTPFHR
IDSKLHAVSGAGLGLSICMRLATLMHGDIRVVSDPGLGSSFSLTLPLSHAAAQMPSQAPV
LTGKSVYVRSPSKELTENVCAWLRRWGATTHTADDAPVDTARPAHLLDLLVSYPVPEGWS
GNYLFAGNPPAAAHAALSAGRGNLSAHSVQAVGSAIALAGPVTSAPADRPAEPLAADARL
RVLVAEDNAINGMILKEQLEQIGCLVALVRNGVDALARWHPDLFDVVITDINMPRANGYE
LAEALRQQGYPGPIVGITANAMREEEQRCLDAGMTSWLAKPFDVGALRAHLQFIRSPAVI
PHAAHTVPRAPASQDEAGFVPIRFRNLFTETMRDDIAALNRAMVNASAGSALDTLHRMRG
ALATVKLFSLVKYCESLE