Protein Info for RR42_RS11520 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 TIGR03864: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system" amino acids 8 to 243 (236 residues), 334.7 bits, see alignment E=1.4e-104 PF00005: ABC_tran" amino acids 24 to 167 (144 residues), 113.3 bits, see alignment E=1.4e-36

Best Hits

KEGG orthology group: K01552, [EC: 3.6.3.-] (inferred from 80% identity to reh:H16_B1041)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y9X2 at UniProt or InterPro

Protein Sequence (262 amino acids)

>RR42_RS11520 ABC transporter ATP-binding protein (Cupriavidus basilensis FW507-4G11)
MAPESPLALRCEAVRKRFGNQHALDGVSLDVRRGEFVALLGPNGAGKTTLFQILSGLFAA
DAGRVTVMGVDMRRHPVRALARLGIVFQQPAIDLDLSVLSNLHFHAGLHGLSRRVAAGRI
ARLLEDFGLAERAAAAVRELSGGNRRKVELARALLHEPAVLLMDEPTVGLDPASRAQLVA
DARRLAAQAQAGVLWATHLVQEVEQADRVIVLHRGAVRFDGTPAALRGATERDSLEQALL
ALTAFPASPIRAAERATERVPA