Protein Info for RR42_RS11170 in Cupriavidus basilensis FW507-4G11

Annotation: septation protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 transmembrane" amino acids 15 to 41 (27 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 80 to 97 (18 residues), see Phobius details amino acids 119 to 139 (21 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details PF04279: IspA" amino acids 1 to 175 (175 residues), 246.3 bits, see alignment E=1.1e-77 TIGR00997: intracellular septation protein A" amino acids 1 to 176 (176 residues), 207 bits, see alignment E=1.3e-65

Best Hits

Swiss-Prot: 82% identical to YCIB_CUPTR: Probable intracellular septation protein A (RALTA_A1457) from Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)

KEGG orthology group: K06190, intracellular septation protein (inferred from 83% identity to reu:Reut_A1394)

Predicted SEED Role

"Intracellular septation protein IspA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YBX1 at UniProt or InterPro

Protein Sequence (179 amino acids)

>RR42_RS11170 septation protein A (Cupriavidus basilensis FW507-4G11)
MKFLFDLFPVILFFVAFKFAGIYAATGVAIAATVVQIGWVWLRHRKVEPMQWVSLAIISV
FGGATLLLHNETFIKWKPTVLYWLFAATLTLSALIWRKNLIRAMLGKQVTMPEAAWGRLN
AAWAAFFAVMGVVNLYVAYQFSTDAWVNFKLFGSMGLMLVFILAQSVWLSRHMQENTPE