Protein Info for RR42_RS11140 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 81 to 99 (19 residues), see Phobius details amino acids 106 to 129 (24 residues), see Phobius details amino acids 138 to 156 (19 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details amino acids 236 to 257 (22 residues), see Phobius details amino acids 273 to 302 (30 residues), see Phobius details amino acids 309 to 334 (26 residues), see Phobius details amino acids 354 to 374 (21 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 51 to 322 (272 residues), 114.9 bits, see alignment E=1.9e-37

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 87% identity to reu:Reut_A1401)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y373 at UniProt or InterPro

Protein Sequence (437 amino acids)

>RR42_RS11140 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
METTMQQRRETVVTGSTMRYRPMNLARWAIWGLTAALMLVMPLFFTGGFAITLMSQMGIM
IIFALSYNMLLGQTGMLSFGHAVYAGLGAFIAIHVLNMVGAGKVWLPVSLLPVVGGLAGA
FFGVLFGYVTTKKSGTTFAMITMGIGEMVFASSLMFPDFFGGEGGISTNRMVGDPVFGIT
YGPGRQVYYLIAVWCLLSMVAMYAWTQTPLGRIANAVRDNPERVEFIGYNTQRVRYLVLI
LSAFFAGISGALSAINFEIVSAENVSAVRSGGVLLAAFIGGAGVFFGPVIGAVVFILFAV
ALSDLTKAWLLYLGLFFVLMVMFVPGGIASLLMMQVPLLARGKLRAMLPDYGRAAAAGLV
LLAAVILTVELVYKVQVDSANGTEMSLLRIGFDAATVKPWLVAAALWVAGLLACRAARAR
VRATWDKVQAEMAGGTA