Protein Info for RR42_RS10105 in Cupriavidus basilensis FW507-4G11
Annotation: phosphonate ABC transporter
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 81% identical to PHNC1_CUPNH: Phosphonates import ATP-binding protein PhnC 1 (phnC1) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
KEGG orthology group: K02041, phosphonate transport system ATP-binding protein (inferred from 81% identity to reh:H16_B0293)Predicted SEED Role
"Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)" in subsystem ABC transporter alkylphosphonate (TC 3.A.1.9.1) (TC 3.A.1.9.1)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0C4YB11 at UniProt or InterPro
Protein Sequence (275 amino acids)
>RR42_RS10105 phosphonate ABC transporter (Cupriavidus basilensis FW507-4G11) MSFRLDAVGVSYQNGQRALSQVKLAASRGERIAVIGPSGAGKTSLLRLLGTSLRPTDGRV EVLEQSPWALSAGHLRRLRCRIGTVHQAPPIPPRQRVVTAILAGRLGVWPGWKSMLSLVY PSDLAGANEQLARLDLADRLFDRCDQLSGGQLQRVGVARVLYQRPELILADEPVSAMDPA LANLTIGELTREASTRAVTLVASLHAVDLALRWFPRIVGLKASEVAFDLPPGRVTDALLR DLYASESGVLPVQGSQPLVVAANASGGNGRKSPCR