Protein Info for RR42_RS09985 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 transmembrane" amino acids 15 to 33 (19 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 105 to 123 (19 residues), see Phobius details PF05154: TM2" amino acids 12 to 58 (47 residues), 57.9 bits, see alignment E=4.7e-20 amino acids 75 to 123 (49 residues), 52.8 bits, see alignment E=1.8e-18

Best Hits

KEGG orthology group: None (inferred from 82% identity to ppw:PputW619_0374)

Predicted SEED Role

"FIG00955003: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YAY1 at UniProt or InterPro

Protein Sequence (137 amino acids)

>RR42_RS09985 membrane protein (Cupriavidus basilensis FW507-4G11)
MQPSSTPPSDTHSKVIGYLLWIFGFTGSHRFYYGKPVSGTIWFFTLGLLGIGWLVDLFLI
PGMDREADSRFASGRYDYNVAWILLTFLGIFGVHRMVIGKWISGLIYLLTGGLFLIGVLY
DFWTLNEQVSERNRIYP