Protein Info for RR42_RS09410 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 PF01590: GAF" amino acids 46 to 166 (121 residues), 34.2 bits, see alignment E=8.8e-12 PF00158: Sigma54_activat" amino acids 312 to 474 (163 residues), 209.3 bits, see alignment E=8e-66 PF14532: Sigma54_activ_2" amino acids 316 to 482 (167 residues), 66.7 bits, see alignment E=6.9e-22 PF02954: HTH_8" amino acids 587 to 626 (40 residues), 43.4 bits, see alignment 5.7e-15 PF18024: HTH_50" amino acids 590 to 629 (40 residues), 27.7 bits, see alignment 4.4e-10

Best Hits

Predicted SEED Role

"Transcriptional activator of acetoin dehydrogenase operon AcoR" in subsystem Acetoin, butanediol metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y8I0 at UniProt or InterPro

Protein Sequence (631 amino acids)

>RR42_RS09410 hypothetical protein (Cupriavidus basilensis FW507-4G11)
ARLFRSWTRSLNTFQLDPGNTSGPRVISAAELKDRRNRAEALLRFSSPVVERLHGIVGKA
GYCVLVADADGALIDFRGQEDRRKEYRQHGLYHGRYFTEDAEGTSGVACVLADKEPITVH
TEDHFRAAFTCLTCTAAPIISPAGELTGVLDVSAVRNSENRDSQELIYAWVCQAAEMIEN
AYLLHDTGHLWTLYLHRSQDYLSLHPELLIAFDDAGNIASMNRQTRSMLSRLYTAIPSNV
QHLFDLNAGQVIDLNSGLEMFPLRLTRGGDRFFARLRPPRQALRTISLPPGHPAAGHAEP
AARAIASDRLVTGDPQVSSHLARALQIIDRRIPVLLQGETGTGKEAFALAVHRGSLRAPQ
PFVAVNCAAIPDTLIESELFGYAEGAFTGAKRKGLKGKILQAHGGTLFLDEIGDMALPLQ
TRLLRVLAENELVPLGSEQSVRVDINLICATHRDLARMVSEGTFREDLYYRLTGAVFRLP
PLRDRTDLGELVDFFLADEAQAHGTRSALSEEAMACIRRYRWPGNVRQLRMALRYACALA
AAQGVIVAEDLPDYLRCPADAAPAAPQPANPPVTAQAFDSAGLRPGELLEREHIAQMLAC
HHWRVKETAKALGMSRATIYRKMARYGIVYP