Protein Info for RR42_RS09360 in Cupriavidus basilensis FW507-4G11

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 PF06821: Ser_hydrolase" amino acids 9 to 186 (178 residues), 139.2 bits, see alignment E=6.5e-45

Best Hits

KEGG orthology group: K07002, (no description) (inferred from 63% identity to bge:BC1002_3447)

Predicted SEED Role

"FIG00998616: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>RR42_RS09360 alpha/beta hydrolase (Cupriavidus basilensis FW507-4G11)
MQRTELPPIVIVPGLRDHVADHWQTLLADKLRAHGRQVSVVPPLEHDRLDCAVQVAALER
TLASLREPALLVAHSAGVLTTVHWARRCARAVHGALLAAPPDFDHPLPAGYPDEDTLRLN
GWTPAPRAALRFPSIVAASRNDPLARFEEVAALASAWGSRLVDLGNVGHLNPAAGYGEWS
RAEPLIQEL