Protein Info for RR42_RS08590 in Cupriavidus basilensis FW507-4G11

Annotation: baseplate assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 TIGR01644: phage baseplate assembly protein V" amino acids 6 to 203 (198 residues), 194.8 bits, see alignment E=5.6e-62 PF04717: Phage_base_V" amino acids 16 to 82 (67 residues), 61 bits, see alignment E=1.7e-20 PF18715: Phage_spike" amino acids 120 to 182 (63 residues), 28.4 bits, see alignment E=2e-10 PF18946: Apex" amino acids 184 to 204 (21 residues), 31.7 bits, see alignment (E = 1.8e-11)

Best Hits

KEGG orthology group: None (inferred from 67% identity to rso:RSc1925)

Predicted SEED Role

"Baseplate assembly protein V"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y203 at UniProt or InterPro

Protein Sequence (205 amino acids)

>RR42_RS08590 baseplate assembly protein (Cupriavidus basilensis FW507-4G11)
MDLAELARLLENLLRLGTVAAVQTGNPPRVRVQTGGLTTTWLPWAERRAGKTRTWNPPTV
GEQVLLLCPSGDVANGIVLTGIPSDATDVPSHSANETVTSYPDGALTRYDHATSELAITG
VKTILVEAATSVLVRCPDTTFDGNVTVQGLLSYQNGIAGTGGEHGNAITGDFIHRDGVLS
SNDVVLDKHDHGGVYRGDSRTDGPR