Protein Info for RR42_RS08335 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 66 to 88 (23 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 140 to 145 (6 residues), see Phobius details amino acids 149 to 151 (3 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 259 to 282 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y7V0 at UniProt or InterPro

Protein Sequence (289 amino acids)

>RR42_RS08335 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MHLCASTPIPDFNSLYNGALSAMTFPPGSISIPALPTLPNPIYPDISNINGEIVQLVQEL
QSYQMLTTFTAFLTPLTSFLGLSLSSILPPIPGTALTLIDLLAMNPAPIYSGISAALAAH
GPSIFPYLKTPIFGSLSVPSIELVTTVKMVVKGYMNNLLDTVFGLINQVTGNLHLPAMPA
LPTLPTLARIEAMVIAAFPGFGSLTALINSGNASLNALLGAVVVPGFPALPALPVPLIPN
YSSYEHEFNEGLNVLYSSLVAYPMTLIMSFVTGTLSMLGFSFPTVCITF