Protein Info for RR42_RS08225 in Cupriavidus basilensis FW507-4G11

Annotation: chromosome partitioning protein ParB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 PF01555: N6_N4_Mtase" amino acids 229 to 277 (49 residues), 27.4 bits, see alignment 1.6e-10

Best Hits

KEGG orthology group: None (inferred from 81% identity to reu:Reut_A2386)

Predicted SEED Role

"DNA modification methylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y7W4 at UniProt or InterPro

Protein Sequence (460 amino acids)

>RR42_RS08225 chromosome partitioning protein ParB (Cupriavidus basilensis FW507-4G11)
MKTSNQLAIAYRAAADLVRYDRNARTHSAAQIEQIKTSLRRFGWTNPALVAGEDLLAGHG
RIEAATQMWAAGETIANCPVPGQVPTVDLSHLSADERRAYILADNKLAENAGWDVDLLAI
ELADLRDADFDLSVIGFDAGELAELLDPPQPGPPGGGAGSLAEQFMVPPFSTLNARDAAW
QDRKKAWLALGIQSELGRDAPAFSSASDQQKADRGAPAQHRTSIFDPVLCELAYRWFCPA
DGLVLDPFAGGSVRGIVAARLGRQYVGMELRAEQVQANRAQLDLLRADDPAPAWHVGDSR
KIGQHLADVEADFVFSCPPYANLERYSDDPADLSTMDYPAFLTAYREVISGAVGQLKPDR
FACFVVGDVREKRGTGCYRNFVADTIEAFLDAGTELYNHAVLLTALGSLPIRAGKQFSAS
RKLGTAHQHVLVFVKGDWKRAVAACGEVDVSDDLFPEAEE