Protein Info for RR42_RS07980 in Cupriavidus basilensis FW507-4G11

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 124 to 147 (24 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 192 to 214 (23 residues), see Phobius details amino acids 258 to 279 (22 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 324 to 344 (21 residues), see Phobius details amino acids 350 to 369 (20 residues), see Phobius details amino acids 378 to 403 (26 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details PF07690: MFS_1" amino acids 37 to 400 (364 residues), 172.3 bits, see alignment E=7.3e-55

Best Hits

Swiss-Prot: 49% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 86% identity to rme:Rmet_1926)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y9R5 at UniProt or InterPro

Protein Sequence (443 amino acids)

>RR42_RS07980 MFS transporter (Cupriavidus basilensis FW507-4G11)
MSSVMTGAPGALESPAHTPAERNEAYRKIAVRLIPFLVFLFVLAWIDRVNVGFAKLQMLQ
DLQFSEAVYGFGAGIFFIGYFLFEVPSNLLLEKIGARRTLARITILWGFASMAMIFVKTP
MQFYALRFLLGVFEAGFFPGVVLYLTYWFPAQRRARINGLFMTSFAIAGVIGGPLAGFIM
SSMEGVDGLANWQWLFVIEGIPSVLAGIAVLMFLPEKPISAKWLSPSERDLVTREIEAEN
RDPAKHSSLRAAFTNSRVWICAAIYFCVVSGNATIAFWSPSIIKELGVKGNLQIGLVSAI
PFIAGTLAMVWNGIHSDRTGERRLHCALATLMAAAGLVLTGMWLHSAVLAMVALTIASVG
ILAAFPVFWSLPSAFLAGTAAAGGIALINSIGNLAGFVAPYMIGWFKTNTGQLSSGLYFV
AALEACATVLVLAFIKTKASAKA