Protein Info for RR42_RS05415 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 147 to 164 (18 residues), see Phobius details PF06271: RDD" amino acids 29 to 176 (148 residues), 74.2 bits, see alignment E=6.6e-25

Best Hits

KEGG orthology group: None (inferred from 77% identity to reh:H16_A1031)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y678 at UniProt or InterPro

Protein Sequence (188 amino acids)

>RR42_RS05415 membrane protein (Cupriavidus basilensis FW507-4G11)
MPAVTTPKPNARPATSAAPDSPVRPAEAPTIRRRIACMLYEGVLLFGVLSASTGVYLLAR
PALQQLGLDSPLAMQCWSFLVLGCYFVWFWQRNGQTLAMQTWRMRVETAAGAPPRWPQAT
LRYLLAWLWLPPSAALGHLLGLVKGPFVGVLCAGLLAWVLLALLDPRRQFLHDRLARTRL
TDLRPPKP