Protein Info for RR42_RS04700 in Cupriavidus basilensis FW507-4G11

Annotation: ribonuclease G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 TIGR00757: ribonuclease, Rne/Rng family" amino acids 13 to 425 (413 residues), 509.5 bits, see alignment E=3.5e-157 PF10150: RNase_E_G" amino acids 121 to 392 (272 residues), 347.5 bits, see alignment E=5.6e-108 PF20833: RNase_E_G_Thio" amino acids 403 to 485 (83 residues), 27.5 bits, see alignment E=2.9e-10

Best Hits

Swiss-Prot: 53% identical to RNG_ECOLI: Ribonuclease G (rng) from Escherichia coli (strain K12)

KEGG orthology group: K08301, ribonuclease G [EC: 3.1.26.-] (inferred from 94% identity to rme:Rmet_0778)

MetaCyc: 53% identical to RNase G (Escherichia coli K-12 substr. MG1655)
Ribonuclease E. [EC: 3.1.26.12]

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.26.12, 3.1.4.-

Use Curated BLAST to search for 3.1.26.- or 3.1.26.12 or 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y632 at UniProt or InterPro

Protein Sequence (488 amino acids)

>RR42_RS04700 ribonuclease G (Cupriavidus basilensis FW507-4G11)
MTEDILVNITPQETRVAIVQQAAVQELHVERTLSRGLVGNIYLGKVVRVLPGMQSAFIDI
GLERAAFLHVADIWHPRDPDKNANAAPLAIEKTLYEGQALMVQVIKDPIGTKGARLSTQV
SIAGRTLVYLPQDPHIGISQRIEGEVDREALRARVQGLVPADERGGFIVRTIAEESSNEE
LGNDIAYLRKIWASIRQNATTLPAPNLLYQDLNLAQRVLRDFVNDATNVIQVDSRENFQK
LVEFAQEYTPAVLPRLSHYTGERPVFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMT
TIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENTEHRDQVL
SELKRALSRDRTRITVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCTGKGQVKTPRTVC
YDILREIMRESRQFNPREFRILGSQHVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQ
EQYDIILM