Protein Info for RR42_RS04605 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 transmembrane" amino acids 22 to 41 (20 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 120 to 144 (25 residues), see Phobius details PF05154: TM2" amino acids 17 to 65 (49 residues), 37.8 bits, see alignment E=8.8e-14

Best Hits

KEGG orthology group: None (inferred from 83% identity to reh:H16_A0890)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y822 at UniProt or InterPro

Protein Sequence (161 amino acids)

>RR42_RS04605 membrane protein (Cupriavidus basilensis FW507-4G11)
MPAATRVSATAAPKPLQGKSKLVTVALAFLFGTVGLHRYYLGGLRDKFAWAHLLAALAGV
IGVMSMQTGAGSPALNWTFAIAGGTSVISAFLAAIVYGLRPDDKWDARFNPHGTPTRSGW
PVVILVILSLLIGTGLLMAGLAISFQTFFESQVEAARALSQ