Protein Info for RR42_RS04265 in Cupriavidus basilensis FW507-4G11

Annotation: chemotaxis protein CheY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2015 transmembrane" amino acids 268 to 285 (18 residues), see Phobius details PF01627: Hpt" amino acids 773 to 865 (93 residues), 51.6 bits, see alignment 1.8e-17 amino acids 990 to 1080 (91 residues), 43 bits, see alignment 8.8e-15 amino acids 1186 to 1259 (74 residues), 47.4 bits, see alignment (E = 3.8e-16) PF02518: HATPase_c" amino acids 1558 to 1693 (136 residues), 52.9 bits, see alignment 9.5e-18 PF01584: CheW" amino acids 1698 to 1825 (128 residues), 66.4 bits, see alignment 4.2e-22 PF00072: Response_reg" amino acids 1879 to 1990 (112 residues), 86.1 bits, see alignment 3.8e-28

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y7Y1 at UniProt or InterPro

Protein Sequence (2015 amino acids)

>RR42_RS04265 chemotaxis protein CheY (Cupriavidus basilensis FW507-4G11)
MSLNFPVSREAAGADPAVQDPLAPIPSPDLSAELAAPASKPAAPVARDLSVLAWLAPSLR
AALDDAAAELGHYVDEVQQAPEALGARDTTSLRLAGQHLHQAAGAVHIVGLRGVDPYCQA
LRRLLEGIDGGAVPADARTLAAFRLGVQALAEYVDDLMVGDDEDPVRLFCSYADVLGRLG
EDRVHPADLWVDELQMLPGILLPMRMASTVTRARQRFEAALLKALRLPVPCAEPGLLHEA
YLPLESALEDVRASEQELRRATDHPDRGVWHVLALVFGALAHGLLPSDLLAKRLAGRAHL
LLRQYLQGQVRVPQALLNDAVYLLVTTAGAQPADEPQSAPVLVLRSAIRECLQAFRIDAA
HAAVHADFRMRYYGWLDPIDTRNLQQAASALERAAAAGPDHGEWHNALAVLAEAAQPLAQ
PALLRCLDAALRVRPGADDSFGTSAIALFLGRALALPWRVHGSTGHAAAAEFARRCDELT
LYLGARERGGPAAQAPRWLAQMVDQARTQRLREAAVAQLRGHLDSGESWLDAYDRDAARA
EAGAHLRDAERAFAALASTLAGLREAGALPEALQADALAVAAALERVMPALEWLAGARAT
QVAGDTASAADAVSERAGRLAAIAGELGVVHAFIDALAFGRAASAHTHADAVDVATQDEQ
GGAVSHATLLARARAAANDAMRHPAAADAPEVKALRAALQAMNEQAAIDDAAGLRRQAGE
ATTQLNAWLAGSHGAAERLVVALAEALPSGAPGTPAPAAAMPAAADTAAIDAELLDIFLT
EAVEVLGEVASDLGGGLPALADADTISRLRRAFHTLKGSSRMVGLHRYGEAAWAIEQVMN
LWIAEARAPAPVLLDLLLRAHDELSGWVNALRGDAHAAHDATGLLAAAQSVRAGEQPEPE
HIAEAVSAPVHAAGLGLVATQPEDELVLEAQPGTELEPVPGIQPPHPAEAEADNTAAGDA
KVIPFRFASTPAEENDHFKLIGPVRISLPLYNVYLQEADDLIRQFATDLSEWRHEGRPCP
SELALRVAHTLQGSASTVGLEPVRAIAEALERLMLQLGAHPVAMHPGDFRLLEQAVERVR
GMLHQFAAGIWPAADDTLCRSLLELGERAMVRPRLALPAVELLAEAEDAPVALLFGKLPG
VANAGMLHDATVTPLHAVQAQAAPAVTDTPDEQATVVTEEAPDPALVEIFLEEAHGSLPE
LGKLLRGWEAACGDGEHASHAGLILRALHTLKGSARMAGAMALGQAAHEMETLLDAAVRA
DRVGPLLFVRLYAWYDRILAHSEALQAGRLLPVDDPELINTMTGQNSAPDEAPVPAAPTL
APTPALVQDAPPSATIQPWLPSAPMQPVAAPLPAPAMGAALAPATDAVERQRALVRVQAR
TLDTLITDAGEVGATRARLESELDAMRSYLGELNDNVARLRGQLREIEIQAESQMASRTA
DARHAVEFDPLEFDRFTRFQELTRMMAESVNDVATVEQNLQRGFDRAAGDLDAQARLTRG
LQRSLMQARMVQFDALAERLYRVARQAASETGKEVRLLIKGGTVEVDRSVLDRMAGPIEH
LIRNAVVHGIESADVRRAAGKPATGALTLEVQQEGNEVVLHFVDDGGGLDLARIRARAIE
RELLAPDDDAGEARLTEMIFAPGFSTADTVSELAGRGVGMDVVRAETVALGGRIALATQA
GQGTRFTVHLPLTTAITQVLLVTLGGRPFAIPSGMIDQVQQLRSQGLLEAYNQGSLDAPG
GAVPFHYLGTLLEETPAVAAGKKYSPVVVVRSGAERIAVHVDEVIGNREVVVKHIGPHLA
RLEGIAGATTLGDGEIVLIYNPVVLAQRFVRERGELARPQLAALPHLPQPAQQPTLGAVA
EFSQGGAAPVQGLATQPTVMVVDDSLTVRKVTHRLLTRAGYQVVLARDGVDALRQLQEVM
PDAMLVDIEMPHMDGFDLTRNVRADSRTAHMPLVMITSRTAEKHRRYAAEIGVNVYLGKP
YNEDELLTTLQHLLGERAVGMAGSVAQMLGEDAGS