Protein Info for RR42_RS03630 in Cupriavidus basilensis FW507-4G11

Annotation: cold-shock protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 67 PF00313: CSD" amino acids 3 to 65 (63 residues), 96 bits, see alignment E=4.8e-32

Best Hits

Swiss-Prot: 71% identical to CSPA_BORPA: Cold shock-like protein CspA (cspA) from Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)

KEGG orthology group: K03704, cold shock protein (beta-ribbon, CspA family) (inferred from 92% identity to rso:RSc3156)

Predicted SEED Role

"Cold shock protein CspE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y5M1 at UniProt or InterPro

Protein Sequence (67 amino acids)

>RR42_RS03630 cold-shock protein (Cupriavidus basilensis FW507-4G11)
METGTVKWFNDSKGFGFITPDAGGNDLFAHFSEIQGGGFKSLQEGQKVRYVAGVGQKGPA
ATKIEPI