Protein Info for RR42_RS03495 in Cupriavidus basilensis FW507-4G11

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 626 PF05947: T6SS_TssF" amino acids 1 to 623 (623 residues), 768 bits, see alignment E=3.8e-235 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 5 to 624 (620 residues), 631.6 bits, see alignment E=9e-194

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 90% identity to cti:RALTA_A0604)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YC02 at UniProt or InterPro

Protein Sequence (626 amino acids)

>RR42_RS03495 type VI secretion protein (Cupriavidus basilensis FW507-4G11)
MDPQLLDYYNRELVYMRELAGEFANQHPKVARRLGMHGTEVADPYVERLIEAFCFLSART
QIKLDAEFPRFTQRLLEVVYPNYVAPTPSIAVAQFRPSRVAGDFARGVEVPRGAQVDAAP
APGEKTACQFRTTQPLTLWPLEIAEARLTGIPPDIRGLERYVPAHLTVQGALRLRLRCTH
DATFDQLPGLDQLPVYLCGDDQIASHLFELLHSASVATLIGQPGAMSERPCAVTEDAVSY
VGMGPGEGALPLPWNNFFGHNLLHEYFACPQRFYFFGLNKLAQGFGQIRGKEAEIVVLLS
TPPGNLISQVDRDQFALFCTPVVNLFPKRTDRIEITPGRTDFHLVADRQHPLDYEIYAVK
QLSGQKSEHSASIAFQPLFATLNSDEGNHGRYFSLRRERRLISEQARKYGTRTAYVGTEL
FVSLVDQHEAPYPDTLRYLSVESLVTNRDLPNLVPRNGLHDLTPAASIPVDGIGLIRAPS
APRPPYADGEMAWRLIRLLGFNYLSLTDLEHRSGGQGLRDMLRLFVASDDLAHQAQIQSL
IGSKVEPVMRRLPGNGPLIYGRGIRCQLTVDEGGFSGISPYLFGVVLEHFLARHVSVNVF
TQTELHSMQRGLVHRWPVRMGGRSAV