Protein Info for RR42_RS03310 in Cupriavidus basilensis FW507-4G11

Annotation: multidrug transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1057 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 336 to 353 (18 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 487 (25 residues), see Phobius details amino acids 529 to 548 (20 residues), see Phobius details amino acids 857 to 876 (20 residues), see Phobius details amino acids 883 to 902 (20 residues), see Phobius details amino acids 907 to 926 (20 residues), see Phobius details amino acids 958 to 977 (20 residues), see Phobius details amino acids 991 to 1017 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1013 (1010 residues), 1135 bits, see alignment E=0 PF03176: MMPL" amino acids 258 to 488 (231 residues), 37.7 bits, see alignment E=1.8e-13 PF02355: SecD_SecF" amino acids 340 to 482 (143 residues), 22.4 bits, see alignment E=1.1e-08

Best Hits

Swiss-Prot: 68% identical to MDTB_CROS8: Multidrug resistance protein MdtB (mdtB) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: K07788, RND superfamily, multidrug transport protein MdtB (inferred from 69% identity to axy:AXYL_00555)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YBW6 at UniProt or InterPro

Protein Sequence (1057 amino acids)

>RR42_RS03310 multidrug transporter (Cupriavidus basilensis FW507-4G11)
MNPSRLFIERPVATALLMVAILLSGLVAFKLLPLSALPEVDYPTIQVTTLYPGASPDVMT
SSITAPLERQFGQMPGLKQMSSSSSGGASVITLQFELTLSLDVAEQEVQAAINAGGNLLP
ADLPMPPVYSKVNPADAPIMTLAMTSDTMPLPKLQDMVDTRVAQKISQLQGVGLVSISGG
QRPAVRIQANPTALAALGMSIDDLRTAIGSANVNGAKGSFDGPARASTIDANDQLKSADE
YRQIIVGYQNGAPIRITDVANIVDGPENSRLAAWANDKPAIVLSIQRQPGANVIEVVDRI
KALLPQLQNALPASVKVQLLTDRTTTIRASVRDVEFELLLAVALVVMVIFVFLRNVPATI
IPGVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENIMRYIEKGDSP
MEAALKGSKQIGFTIISLTFSLVAVLIPLLFMGDVVGRLFREFAITLAVSILISAVVSLT
LTPMMCARLLHHVPEEKLSRFHRATGRFFDNVIDRYGRALEWVLDRQKLTLLVAVGTMVL
TVVLYMLVPKGFFPVQDTGVIQGITEASQTTSFPAMARKQQAVAKVVLEDPAVESLSSFV
GVDGTNTTLNAGRLLINLKPKDQRSDSIEDVTRRLQAAVDKLGGVSLYTQPVQDLTIEDR
VARTQYQFTVQDPDPTTLATWVPRLVERLKLEPELRDVASDQQNNGLRAYVDIDRDAAAR
FGITTAVIDSALYSAFGQRLVSTIFTQASQYRVVLEAMPQFRTDPQSLAELRLPSSSGGQ
VPLGAFARISERTGPLVINHQGQFPSATISFNLAPGESLGAAVDKIAKVEQEIGLPISMQ
TDFQGAALAFRASLSNTLWLILAAVITMYIVLGVLYESTIHPVTILSTLPSAGVGALLAL
LVSGQDLGIIAIIGIILLIGIVKKNAIMMIDFALEAEREGGMAPREAIFQACLLRLRPIL
MTTMAALLAALPLMLGTGIGSELRRPLGITMVGGLLVSQVLTLFTTPVIYLAFDSVATRL
KAWRRRRFGDDAGGGAGGGAGGGAGGNEAGHAPEPRP