Protein Info for RR42_RS03255 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 PF11578: DUF3237" amino acids 13 to 165 (153 residues), 151 bits, see alignment E=1.1e-48

Best Hits

Swiss-Prot: 50% identical to Y1987_RHOPT: UPF0311 protein Rpal_1987 (Rpal_1987) from Rhodopseudomonas palustris (strain TIE-1)

KEGG orthology group: None (inferred from 52% identity to put:PT7_0832)

Predicted SEED Role

"UPF0311 protein RPA1785"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y563 at UniProt or InterPro

Protein Sequence (166 amino acids)

>RR42_RS03255 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MTAPRAITALPAPTLEHVADFSFRLAPVTEVGASALGNRRVIPILDGVVSGPRLQGRILP
GGADFQLVRHDAGNGIVVADIEARYVLETDDGARIYIVNAGVRSGPAELIARLAGGEIVD
PRLIYFRTAPRFETAAPGYDWLMQHLFVATGARYPDRVEMRYFRVV