Protein Info for RR42_RS03145 in Cupriavidus basilensis FW507-4G11

Annotation: peptidase M48

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 602 signal peptide" amino acids 1 to 61 (61 residues), see Phobius details PF01435: Peptidase_M48" amino acids 191 to 360 (170 residues), 115.6 bits, see alignment E=1.3e-37

Best Hits

KEGG orthology group: None (inferred from 82% identity to reu:Reut_A0541)

Predicted SEED Role

"Exported zinc metalloprotease YfgC precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4XZR9 at UniProt or InterPro

Protein Sequence (602 amino acids)

>RR42_RS03145 peptidase M48 (Cupriavidus basilensis FW507-4G11)
MGMASGGRYHSNMRKNQTLAGALSSPARQARLMSSRTSLGLARRSLAALVALTMALPAWP
QQRLLLNDSTRTAAAAAAPGSDSRDGSDQVYDNLNRSVKAGQKSDFGLRSNNTVVETSGV
QLPDLGDPSTASLTPDMERRLGERIMRDIRRDPDYVSDPLLADYLNALGYRLVQAARRQN
ISGSTGAGTFATGFELFAVRDRSINAFALPGGYIGVHTGLLVQSDTESELASVLGHEIGH
VMQRHIARGITTQDQSMWIALASMVLAGLAATKSGDAAAALAMGGQAAAVSNQLSFSRGA
EREADRVGFQIMTAAGFDPQGMPDFFKRLQRVMGISESSVPSYVRTHPLTSERIADMQDR
VSHVAVRHVASTPEYEFARMRARILQETSPSDLQNARAALQTQLASASPARLPALHYGIA
FAEQRLGRNAAAQQSLAEARRLYGTIPGATSGSPMLDVMAIELARAQGRQQDALNQAAAS
MKAFPLSHALALSYAATLLDAGRTDQAVTFLRERTREEIARSEWWDMLARAYAAQGRRVQ
QHQALAEKYAVDGAYQAAIEQLQIARKAGDGDFYTLSEVDARLHQLERQYREEKQDNKGM
PN