Protein Info for RR42_RS02375 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 51 to 77 (27 residues), see Phobius details amino acids 127 to 149 (23 residues), see Phobius details amino acids 155 to 181 (27 residues), see Phobius details PF09335: SNARE_assoc" amino acids 52 to 170 (119 residues), 34 bits, see alignment E=1.8e-12

Best Hits

KEGG orthology group: None (inferred from 84% identity to reu:Reut_A0426)

Predicted SEED Role

"probable membrane protein YPO3302"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YBD2 at UniProt or InterPro

Protein Sequence (192 amino acids)

>RR42_RS02375 membrane protein (Cupriavidus basilensis FW507-4G11)
MEGFIDWLFETVALPKVGLPAIFVVSLVSATLLPLGSEPAVFAYIKLNPHLFWPAIVVAT
LGNTAGGAIDWWLGYAAKLAVVRLRQRRQQRAHEEEHAEHRRHPRQPRKPSLDARYFRWM
RRLGPPTLLVSWLPGVGDPLCTLAGWLRLSFWPSLVYMAIGKFLRYLAMTIALLWIPDSF
WHGIAASLKSLF