Protein Info for RR42_RS02280 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 2 to 470 (469 residues), 385.6 bits, see alignment E=1.7e-119 PF02321: OEP" amino acids 67 to 260 (194 residues), 61.9 bits, see alignment E=3.6e-21 amino acids 288 to 468 (181 residues), 91.2 bits, see alignment E=3.8e-30

Best Hits

KEGG orthology group: None (inferred from 74% identity to reh:H16_A0420)

Predicted SEED Role

"FIG00976799: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4XZC7 at UniProt or InterPro

Protein Sequence (482 amino acids)

>RR42_RS02280 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MAAAMLSACAVGPDFTAPAAPAAPSYTEGTQPTRTSAADAPHGQAQTLESGADVPAQWWT
LLRSPALDRAIRAALDASPTLAQAQARIEQARQELVATTGARLLPRVDAKLNTTRQQVDV
NSLGITAFPSPGPFTLYGASVAISYTLDLFGGQRRELEGLRAAVDYQRFELEAARLTLAG
NVATAAIREAGLRAQIAGTEAIVAAQQRQLAITEQRLRAGGVAQVDAQRQRNELAQSQAL
LPGLAQQLAATRHQLAVYLGQAPASAQLPEFRLEDLTLPATLPVSLPSAMARRRPDIRAA
EALLHQASANIGVATAQRYPQLTLSGSAGTQALSARDLFGSLNVWSLAAGLAQPVFRGGE
LVARKRAAQAAYAQSLAAYQQTVLQGLREVADSLRALQADANTLQARADSAKQAADTLSI
VTGQYRLGGVSQLAVLDAERQYRQAALALSQATASRFTDSVALLQALGGGWWQAEAEAAA
AQ