Protein Info for RR42_RS02265 in Cupriavidus basilensis FW507-4G11

Annotation: excinuclease ABC subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1940 TIGR00630: excinuclease ABC subunit A" amino acids 6 to 967 (962 residues), 909.6 bits, see alignment E=1.3e-277 PF17755: UvrA_DNA-bind" amino acids 291 to 356 (66 residues), 28 bits, see alignment (E = 3.3e-09) PF17760: UvrA_inter" amino acids 1144 to 1248 (105 residues), 80.6 bits, see alignment 1.1e-25

Best Hits

Predicted SEED Role

"Excinuclease ABC subunit A, dimeric form" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y4U1 at UniProt or InterPro

Protein Sequence (1940 amino acids)

>RR42_RS02265 excinuclease ABC subunit A (Cupriavidus basilensis FW507-4G11)
MSSGVIRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAEL
FDRQTAQPVRHDSPETIYAELQARAAQGDPRLVVTFPVELPETTTDAEIEQWLSVSGYTR
VQAQRVVASPTGPRKVLDVVADRFRLGNTEKVRVLEAIEASLKRGSGRVNVYVTDAANEG
AQAQVWRFSTGLHSPESDIRYADPQPALFSFNSAYGACETCRGFGRVIGVDLGLVIPDER
KTLRGGAIKPMQTPAWKECQDDLMRYAAKAGIPRDVAWSSLTPAERAWVIDGSPDWNGKW
NTHWYGVKRFFDYLESKAYKMHIRVLLSKYRSYTPCETCGGARLKTEALLWRLGSKPGAD
AVCAPQKRFAPRGVDWDRTQLEALPGLTVHDLMLMPIERIRKFFDELTLPSLMLDDALKL
LLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLVKTLFVLDEPSIG
LHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGNIIFDGTPA
DIRGSGTLTGEYLAGHRQVTDLSRWTPRAVDAATPRIVLEGASEHNLRDVTVEIPLQRLV
CVTGVSGSGKSTLLQDVLYPAMARQFGKSTDAPGAFRSLTGAEQVADVVFVDQSPIGKTA
RSNPASYVGAFDEIRKLFAKAPMALQRSYTAGMFSFNSGDGRCPTCGGSGFEHVEMQFLS
DVYLRCPDCDGRRYRAEILEVKIERALPGQPPRALSVADVLELTVSEAVAYFAGDAAVLR
VLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKPMPYECKLFMFD
EPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGPEGGDAGGEVLC
VGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQAALRAARARRAIEGEDVVRI
VNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYARSIVQ
PAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMYVKLGIQHCIHDGTP
VTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVYTDLAKWAKARGNTHLRVDGEFLPV
DPWPRLDRFREHTIELPVGDIIVSADNEAALRALLGQALEAGKGVMHLLAPLDGLQHAMG
NGGTARVGSTTVFSTKRACPVCSTSYPELDPRLFSYNSKHGWCTSCVGTGLTLTREQRAA
YDDTVMADDNRGREQTLPSEQQEPDDVADTPCADCGGTRLNPVARAVTFDTHPIVAVAQW
TVSDTHRWVQGLHLAGREGEIARDVVSEIRSRLQFLEEVGLGYLSLDRAAPSLSGGEAQR
IRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGEKGNTLVVVEHDEDTIRCA
DHIIDIGPGAGKRGGTLVAQGGVAALSASADSLTGQFLAQPILHPLQPRREVTPAGKNNE
AVPERWLTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSV
MSSPATRRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQT
PIGKTPRSCPATYIGVWDTIRKLFAQTLEAKARGYSASRFSFNTGDGRCPACEGQGVRTI
GMSFLPDVKVHCDVCHGQRFNPETLAVTWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQ
LMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQQAPHTLYVLDEPTVG
LHMADVAKLIRVLHRLADGGHSVVVIEHDLDVIAEADWILDLGPEGGVAGGGIVAATDPE
GLVRVRASHTGAALAPVLAR