Protein Info for RR42_RS02170 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 75 to 92 (18 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 128 to 153 (26 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 193 to 213 (21 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details PF01925: TauE" amino acids 10 to 235 (226 residues), 92 bits, see alignment E=2.5e-30

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 42% identity to vei:Veis_2505)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y4S6 at UniProt or InterPro

Protein Sequence (245 amino acids)

>RR42_RS02170 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MTPLQLACLVPIVLWAYTIFGLTGFGSSIMAMPLLTQIVPLRTAVPMILFFDLVAGTLLG
MRSRSHVHVGELRRLMPSVLVGMISGLALLMFAPERPLLLLLGLFVLLYPAWNLLFKRGF
SELDPRLSVPFGVVGGMLTAMFGTGGPLYTIYLAGRLRDAAQLRATTSTLIVLTAFGRLI
LFAVAGLYANTAIFALAAMLMPCAIAGYFMGGWLHRRIAPDKVIRVVWAILISAGFGLIY
RSALG