Protein Info for RR42_RS01935 in Cupriavidus basilensis FW507-4G11

Annotation: pirin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 PF02678: Pirin" amino acids 20 to 123 (104 residues), 124.5 bits, see alignment E=1.9e-40 PF05726: Pirin_C" amino acids 176 to 274 (99 residues), 87.7 bits, see alignment E=6.2e-29

Best Hits

Swiss-Prot: 52% identical to Y3178_CAUVC: Pirin-like protein CC_3178 (CC_3178) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K06911, (no description) (inferred from 84% identity to reu:Reut_A0326)

Predicted SEED Role

"Pirin-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y6P8 at UniProt or InterPro

Protein Sequence (291 amino acids)

>RR42_RS01935 pirin (Cupriavidus basilensis FW507-4G11)
MSVIEHLLKPHTRDLGDFAVSRLLPAAATQTVGPFIFFDHMGPVAMPPGEGADVRPHPHI
GLATVTYLFEGEILHHDSLGSKQVIKPGDVNWMTAGKGIAHSERSPQSARDAGPRLHGIQ
TWVALPKEHENVEPSFHHHPAATLPKLERPGVRMTVIAGDAFGAEAPVKVFSRTLYVAIE
LEAGASLEIPAEHAERGVYPVDGTIALDGEVLPERHLAVLVPGQPVTLTAQVASRVMLLG
GDPTDGHRFIFWNFVASTKEAIEAASQRWEDDQFPRVPGETDRIPLPQRKR