Protein Info for RR42_RS01760 in Cupriavidus basilensis FW507-4G11

Annotation: ammonia channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 83 to 104 (22 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 176 to 198 (23 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 324 to 344 (21 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details amino acids 381 to 399 (19 residues), see Phobius details amino acids 411 to 432 (22 residues), see Phobius details amino acids 458 to 479 (22 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 81 to 509 (429 residues), 450.9 bits, see alignment E=2.1e-139 PF00909: Ammonium_transp" amino acids 83 to 509 (427 residues), 410.8 bits, see alignment E=2.7e-127

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 92% identity to reu:Reut_A0292)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4XZ26 at UniProt or InterPro

Protein Sequence (511 amino acids)

>RR42_RS01760 ammonia channel protein (Cupriavidus basilensis FW507-4G11)
MKSWFKRILTTGAMALALGTAGIGLSTHAVAQDKPAAEASAPAAAAAAAPATASAPAAAA
AAPAEAAAPAAAPAPVPNKGDTAWLLVSTAFVILMTLPGLALFYGGLVRSKNMLSVLMQC
LVIFSLVSLLWAIYGYSFAFTEGNAFFGGTDRLFMKGLNVDAVAATFSKGVVVPELAYFA
FQCAFAAITCGLIIGAFAERAKFSAVLVFVVLWFTFSYIPMAHMVWFWPGPDLYTDAAAG
AAATAKSGWLFQKGALDFAGGTVVHINAAVAGLVGAFMFGKRIGFGREALRPHSLTFTMV
GASLLWFGWFGFNAGSALEANGSAALAFVNTLLATCAAVLSWTFGEWISKGKPSMLGGAS
GAVAGLVAITPAAGFVGPMGSIVIGIAAGLLCLWGVTGLKKLLGMDDSLDVFGVHGVGGI
LGALLTGVFAAPSLGGTGIYDYVANKVSDDYSIVGQVWIQFEGVLTTIVWSSVVAFVAFK
LVDMLIGLRVPEEEEREGLDITSHGETAYEA