Protein Info for RR42_RS01200 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF00665: rve" amino acids 106 to 204 (99 residues), 70.5 bits, see alignment E=1.9e-23 PF13683: rve_3" amino acids 193 to 257 (65 residues), 64.8 bits, see alignment E=7e-22 PF13333: rve_2" amino acids 214 to 258 (45 residues), 22.9 bits, see alignment 1.2e-08

Best Hits

KEGG orthology group: None (inferred from 77% identity to rpi:Rpic_1121)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y6M7 at UniProt or InterPro

Protein Sequence (269 amino acids)

>RR42_RS01200 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MSRQAYYKRRHSELRQTARDARICALVTEVRLRQPRLGTRKLQRVLQAPLAKADIRVGRD
RLFDVLRAARLLVKPHRAYHKTTNSHHRFRCHPNLLKEGPQKVVPTAAEQVWVADITYLP
TTQQTVYLSLVTDAWSRKIVGYHVHDSLQTEQVSQALKMALRSRRTRQTLVHHSDRGIQY
CATYYQAIHQRHGLTCSMTDGYDCYQNAMAERINGILKSEFLLNRPTDLQQAARMVKESV
QIYNRERPHQALKYKTPDEVHRASITLER