Protein Info for RR42_RS00535 in Cupriavidus basilensis FW507-4G11

Annotation: IMP dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1180 PF08379: Bact_transglu_N" amino acids 6 to 84 (79 residues), 97.1 bits, see alignment 1.2e-31 PF01841: Transglut_core" amino acids 129 to 246 (118 residues), 62.4 bits, see alignment E=7e-21 PF09899: DUF2126" amino acids 276 to 1178 (903 residues), 1334.8 bits, see alignment E=0

Best Hits

Predicted SEED Role

"Large protein containing transglutaminase-like domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4XYI4 at UniProt or InterPro

Protein Sequence (1180 amino acids)

>RR42_RS00535 IMP dehydrogenase (Cupriavidus basilensis FW507-4G11)
MATHVALNHVTHYRYDRPVKLSPQVVRLRPAPHCRTPILSYSLRIEPEQHFVNWQQDPFA
NYLARLVIPEPTTEFKITVDLVVEMAVYNPFDFFLEPYAENFPFTYEPGLAYELAPYMVK
GELTPRFAAFVQSIPRDKQTTSDFLVALNQRLQEDIRYLIRMEPGVQTPEQTLATGAGSC
RDSGWLLVQTLRHLGLAARFVSGYLLQLAPDVKSIDGPSGTDVDFTDLHAWCEVYLPGAG
WIGLDPTSGLLAGEGHIPVACTPEPGSAAPVSGAVDKSEVTFHHEMSITRIYESPRVTKP
YTEAQWQAVAAVGAEVDIQLNAQDVRLTMGGEPTFVAVKDRDGAEWNTDALGTTKRAYAT
ELVHKLRARYGKGGFLHFGQGKWYPGEQLPRWALSICWRADGQPCWQDPSLFADEREPAD
YTEADAHRFLDSLAKRLGLNPGFVQPGYEDTWYYLWRERRLPVNVDPLEARLDDEMERMR
LRRVFDGGLARPTGYVLPLRRTGLEDGPALAAHRWISGPWFFRDDRMYLLPGDSPMGYRL
PLDALPWVSEADYPWQFDQDPFAARSPLPTGAQLRAQLPGLAGQGAEPGQAAEFRASTAA
YSASGPAPGSAAAARAGAKPGSGAIGGTAAPAALAADLARVPGRGESAGWITRTALCVEV
RHPSRAAGPKAERAAAGDKRGMLYVFMPPLTVLEDYLELLAAVEATAAGLGVKIVLEGYP
PPRDVRLKLLQVTPDPGVIEVNIHPAANWDELVDHTEFLYQAAHETYLSTEKFMLDGRHT
GTGGGNHFVLGGATPADSPFLRRPDVLSSLIAYWHNHPSLSYLFSGMFIGPTSQAPRVDE
ARNDQLYELEIAFAELQHQLDRLGGAEGGVGAHMPPWLVDRALRNILIDVTGNTHRSEFC
IDKLYSPDGPTGRLGLLELRAFEMPPHARMSLVQQLLLRALVARFWREPYRGRLTRWGTE
LHDRFLLGTFVQMDFEDVLTEMREAGFAFDNAWFAPHFEFRFPRVGELAAGGLSLTLRTA
LEPWHVMGEEGSAGGTVRYVDSSLERIEVRVLGMNDSRHVVTVNGRAVPLQPTGRVGEFV
AGVRYRAWAPPSALHPTIASHAPLTFDVVDTWMGRSIGGCQYHVSHPGGRSYETFPVNAY
EAESRRLTRFFTLGHTPGVMRVEPPRRSLEFPFTLDLRQR