Protein Info for RALBFv3_RS22890 in Ralstonia solanacearum IBSBF1503

Annotation: molybdate ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13531: SBP_bac_11" amino acids 32 to 254 (223 residues), 204.3 bits, see alignment E=4.6e-64 PF01547: SBP_bac_1" amino acids 37 to 247 (211 residues), 72.4 bits, see alignment E=1.3e-23 TIGR01256: molybdate ABC transporter, periplasmic molybdate-binding protein" amino acids 37 to 253 (217 residues), 199.9 bits, see alignment E=2.6e-63 PF04069: OpuAC" amino acids 59 to 207 (149 residues), 22.1 bits, see alignment E=2.1e-08

Best Hits

Swiss-Prot: 36% identical to YVGL_BACSU: Putative ABC transporter substrate-binding lipoprotein YvgL (yvgL) from Bacillus subtilis (strain 168)

KEGG orthology group: K02020, molybdate transport system substrate-binding protein (inferred from 95% identity to rso:RSp0106)

Predicted SEED Role

"Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>RALBFv3_RS22890 molybdate ABC transporter substrate-binding protein (Ralstonia solanacearum IBSBF1503)
MSRFSLRAGVRAVGLAAALSLGLCAQAQAADLVVSAAASLTNAFKTLAQSYEAQHPDTHI
VLNFGASDVLMQQIVRGAPADVFASADQEAMDKAVSEKVIQPGTRRDFVANQLVLIVPSA
SAVPVHALGDLTRPDVQRVAIGNPASVPVGRYAKRALDAAGLWQPVSAKAVLAQNVRQAL
DYVARGEVEAGLVFATDAAVAADKVKVAAPVPLSVPLTYPIAVTAGTRQPQQAADFVAFV
LSPAGQAVLAKYGFLKP