Protein Info for RALBFv3_RS22885 in Ralstonia solanacearum IBSBF1503

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 signal peptide" amino acids 12 to 13 (2 residues), see Phobius details amino acids 33 to 34 (2 residues), see Phobius details transmembrane" amino acids 14 to 32 (19 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 109 to 132 (24 residues), see Phobius details amino acids 142 to 164 (23 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 239 to 262 (24 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 306 to 324 (19 residues), see Phobius details amino acids 328 to 348 (21 residues), see Phobius details amino acids 360 to 385 (26 residues), see Phobius details amino acids 393 to 413 (21 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 347 (326 residues), 110.6 bits, see alignment E=4.1e-36 amino acids 276 to 426 (151 residues), 40.7 bits, see alignment E=7.6e-15

Best Hits

KEGG orthology group: None (inferred from 95% identity to rsl:RPSI07_mp0074)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (434 amino acids)

>RALBFv3_RS22885 MFS transporter (Ralstonia solanacearum IBSBF1503)
MQRLARLIAPRFHYGWIALAVVFLILLCAAGTRATPSVMMLPLEHEFGWSRGTISLAISI
GIALYGLTGPFAAASMQYFGIRPTVLGALAVLIAGTALSAMMRQPWQMVLLWGVMVGGGT
GVAAITLGATVVNRWFTTHRGLAMGILTASSATGQLVFLPMMAAVVEHHGWRPVVLIVAG
ALALLLPVVGLLLPESPKSVGLRTYGEPADAPEADHGPRANPITLALRTLMQATRKRDFW
LLSASFFICGASTNGYIGTHFIAMCADHGLTEVKGASLLAAMGICDLVGTTLSGWLSDRY
NSRVLLFWYYGLRGLSLIYLPYAFGFEFFGLPVFALFYGLDWIATVPPTVRLTNDVFGKA
AAPIVFGWIVAGHQLGAAFATLGAGLMRASLGNYTLASMISGGLCVVGAFLVLRIHRQRK
PDADAEASGQPATA