Protein Info for RALBFv3_RS22455 in Ralstonia solanacearum IBSBF1503

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 transmembrane" amino acids 28 to 51 (24 residues), see Phobius details amino acids 75 to 99 (25 residues), see Phobius details amino acids 105 to 128 (24 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 68 to 223 (156 residues), 41.9 bits, see alignment E=4.7e-15

Best Hits

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 78% identity to rpi:Rpic_3923)

Predicted SEED Role

"polar amino acid ABC transporter, inner membrane subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (258 amino acids)

>RALBFv3_RS22455 amino acid ABC transporter permease (Ralstonia solanacearum IBSBF1503)
MTAEALLLHLRYLLVGPFPNGPLGGAALTLWMALLACAASTAAGIAFALLLDRLDHLGTR
AAGLACALRGTLATLRAVPVLMLMFWAYFLIPMALGVAVPETTTVVTALAAVGAAYIAQS
MQAGLLAVGTGQRNAALALGMSPGQALLTVVLPQAWRIMLPSVANQWVSTVKDTSLAYIV
GVVELSTAASQVNSRIVAYPAEVFAAVAGLYFVLCSGIELLPRWLRAGAAARSAAAARVR
PWRGSLRWRARPVADTRT