Protein Info for RALBFv3_RS22025 in Ralstonia solanacearum IBSBF1503

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 672 PF13181: TPR_8" amino acids 87 to 117 (31 residues), 20.4 bits, see alignment (E = 2.3e-07) amino acids 120 to 149 (30 residues), 14 bits, see alignment (E = 2.7e-05) amino acids 155 to 185 (31 residues), 12.4 bits, see alignment (E = 8.5e-05) PF13432: TPR_16" amino acids 92 to 153 (62 residues), 27.9 bits, see alignment E=1.4e-09 amino acids 165 to 221 (57 residues), 30 bits, see alignment 3.1e-10 PF13414: TPR_11" amino acids 92 to 130 (39 residues), 35.2 bits, see alignment 4.4e-12 PF13431: TPR_17" amino acids 107 to 139 (33 residues), 34.4 bits, see alignment (E = 8.5e-12) PF07719: TPR_2" amino acids 119 to 149 (31 residues), 24.1 bits, see alignment (E = 1.5e-08) PF13844: Glyco_transf_41" amino acids 300 to 458 (159 residues), 129.7 bits, see alignment E=5.7e-41 amino acids 468 to 651 (184 residues), 156.8 bits, see alignment E=3.5e-49

Best Hits

KEGG orthology group: None (inferred from 87% identity to rsl:RPSI07_mp0265)

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (672 amino acids)

>RALBFv3_RS22025 hypothetical protein (Ralstonia solanacearum IBSBF1503)
MNSSQAQTKTPHAGSAKTQSALPFLQMLMGSGRFKEAFLAAASIAEQESNPVILNIAAIA
AREANDPASADRYWSRCIERFPQDGNAYINRGNLLAESGYAEQAEHLYLKAIELDPDAPD
AHYNLGNLYSRSRQYQAALGQYREALKRAEGRPDLHNSMGCACSELGLTDEALHHLQRAV
QLAPRYAEAWLNLGLLYRDTRQLKAAAGALQHAALPGDPSEAQALSEWAMVQMSLCDWTA
AARTESRLLGLLRAGRAAGVVPFVTLALPNCTASDQRAAAAQATRQAPPPVDTMTDDPAE
RSPGRIRVGYLSADLHAHATAYLLAGVLEHRDTACFETFLYSYGPQTHDDMQNRLRAACE
HFVDIAPLSDGQAAERIAADRLDLLIDLKGFTKHARLDIGAMRPAPILVNWLGYPGTLGN
RRLADYLIGDPAVTPVSQQAQFEETLALMPHCYQPTDSRREILPPPDRAELGLPADGLVF
CCFNQAYKITEARAQTWFAILGRTPGAVLWLLEPDASARAALLEKAGRHGIASERLVFAP
QVVQRAHIARLQLADLALDTFPYTSHTTASDLLWAGVPLLTRAGDTMASRVAASILQAAG
LHDLVVTTEDDYVNAAVRLAGDAQALASVRLRAQAARNTPLFDTGTFARDLETLFGRIVE
RGPHGTPEPIVL