Protein Info for RALBFv3_RS22020 in Ralstonia solanacearum IBSBF1503

Annotation: APC family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 543 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 237 to 260 (24 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details amino acids 363 to 382 (20 residues), see Phobius details amino acids 401 to 421 (21 residues), see Phobius details amino acids 427 to 444 (18 residues), see Phobius details amino acids 459 to 477 (19 residues), see Phobius details amino acids 489 to 507 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 10 to 425 (416 residues), 176.8 bits, see alignment E=7.5e-56 PF00324: AA_permease" amino acids 15 to 379 (365 residues), 121.2 bits, see alignment E=5e-39

Best Hits

Swiss-Prot: 61% identical to YBEC_BACSU: Probable amino acid-proton symporter YbeC (ybeC) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 97% identity to rso:RS03682)

Predicted SEED Role

"Amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (543 amino acids)

>RALBFv3_RS22020 APC family permease (Ralstonia solanacearum IBSBF1503)
MEKHVQRNLGAWPLMLTGLGSIIGSGWLFGAGHAAKVAGPAAIFTWVIGAVVILAIALTY
AELGAMFPETGGMVRYARYSHGSLVGFVAAWANWIAIVTVIPIEAEASIQYMSSWPWPWA
QGLFQHGELTPLGLGLSAVLVVIYFLLNYWGVKVFAKANTTITVFKFVIPALTAVALIGA
GFHPSNFGGTESASFAPYGWSSVLTAIATCGIVFSFNGFQSPINLAGEARNPGRNVPLAV
IGSIVLAAVIYVALQIAFLGAVPAESLAKGWHGIDFHSPFAQLAIALNLNWLAIVLYLDA
FVSPSGTGSTYMATTTRMIYAMERNNTMPAIFGRVHPIFGVSRSAMWFNLAVSFIFLFFF
RGWGALAAVISVATVISYLTGPTSVMSLRKSSPELHRPLRMPGLSVIAPFAFVCASLILY
WAKWPLTGEIIVLMLVALPVYFYYQAKAGWPDFKRELKGAWWMIGYLPAIAALSYFGSTE
FGGKGLIPYGWDMVIVSAVSLFFYYWGVASGWHTRYLDEVEYVHEDIPAPAGERVPGGMP
QGI