Protein Info for RALBFv3_RS21570 in Ralstonia solanacearum IBSBF1503

Annotation: flagellar export protein FliJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 TIGR02473: flagellar export protein FliJ" amino acids 7 to 145 (139 residues), 99.5 bits, see alignment E=1.1e-32 PF02050: FliJ" amino acids 21 to 142 (122 residues), 101.9 bits, see alignment E=1.4e-33

Best Hits

Swiss-Prot: 31% identical to FLIJ_SALTY: Flagellar FliJ protein (fliJ) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02413, flagellar FliJ protein (inferred from 94% identity to rsl:RPSI07_mp0350)

Predicted SEED Role

"Flagellar protein FliJ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (154 amino acids)

>RALBFv3_RS21570 flagellar export protein FliJ (Ralstonia solanacearum IBSBF1503)
MTTHKPFHLETVLELAQKDTEKATQEVGRLMNTRELATQKLALLSNYRNNYRQQMLTNAE
GGIDATRLHNYAAFIDRLGSAVDQQRGTLTALEAQLQRSRDNWLEKQRREQSFDILRQRH
VEEQRQDQERRAQRENDEHAAKAIRMRAAQAGSN