Protein Info for RALBFv3_RS21525 in Ralstonia solanacearum IBSBF1503

Annotation: fatty acyl-AMP ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1113 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00501: AMP-binding" amino acids 37 to 459 (423 residues), 188.2 bits, see alignment E=4.2e-59 PF01370: Epimerase" amino acids 749 to 950 (202 residues), 45.5 bits, see alignment E=1.3e-15 TIGR01746: thioester reductase domain" amino acids 749 to 1095 (347 residues), 223.9 bits, see alignment E=1.9e-70 PF07993: NAD_binding_4" amino acids 751 to 984 (234 residues), 184.2 bits, see alignment E=5.4e-58 PF01073: 3Beta_HSD" amino acids 751 to 926 (176 residues), 28.1 bits, see alignment E=2.1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1113 amino acids)

>RALBFv3_RS21525 fatty acyl-AMP ligase (Ralstonia solanacearum IBSBF1503)
MVRSLSFAAALQSAPRLPTLIAVTLWSLPMDSVLDCLEHWARLQPDKVLFEFRAVSGQAL
ARHTYGSLLAAVDRLAALLLEHGRFRHGDRVLLAHRPGLGTIVSLLGCARAGLIAVPVAL
PVRADDAAMRRVRAIAVNCSAAAVLSEGAQLSRLRVLLAAWPETAGLAVQDSDVGMADAV
DRRSSVPRRGASVSPQPVLFLQYTSGSTGQPRGVMVSHRNVIANARATVEDSPVGVSWLP
AHHDMGLIGYHLFPLIAGGASYGMAPADFLQTPAAWLRLISEVRATHTSAPDFGYDYCLR
PGKIDAMEIEGIDLGCLRAMMSGGERVRPATVRRFLDRFGRYGLRREACVASYGLAEATL
NVAHEGRGSLCFSREALRKHRAVIAAPGEPSVEITSCGKPASGMLVSIALAKGTAADAAD
VGAANGCAHAANGTPLQDPPGAVVGEICVQGESITAGYWNDAAPARQVLRTGDLGFLWQG
ELYVCGRRKELMIVAGANFYPEDLEEAVLAGGAAVRPRGLCAFQDELGQVVLLAEPRRID
ALPDPAALAQVARHAAGLMPDVVALVAPRSIALTTSGKLARAETRAAWAAGALRVLASHR
SGTASTMAFAGMRHASWRQGLRDVLGRHGAAGPASAALPLSALGIDSLTLASIQVELEAL
LRQHGSGALAEALDAPLLLQVSLNGLVAALAPLDRGGAEGAAQALASIEQLKAAFDSAVG
SRMQADLQPEPQPLPLTPLSSPAEAGTAILLTGATGFFGPFLLHELLRQTAQDVIVLVRA
RDPAHAMARVDEALRRAYLPPRAPGMRVRAVCGDLALPQFGLADDAWARVAAETGEVFHN
GACVNYVMTYDAMRPVNVEGTRSVLRFARHGGVRRTVHLVSSTFIFGWSARGVLLETDCN
AAMQALDFGYAQTKWVAEQLAMAAGAEGLDVRIYRPSLISVSTRGAGDTDDVALRMLAFM
IRHGVAVDTPNQLSIVAADVIAHNMVGISRHAVSAPALHFTADRYYSMTELTRVIERDYG
VTFRYYDIPRFIDELNRRCSEQDPVFPLLDFFNRSADKIAAMQLKRYSSEHYQRARAVLA
EPMMDPSLAQTAAYLMQYLRERGWVAPAQALPH