Protein Info for RALBFv3_RS21135 in Ralstonia solanacearum IBSBF1503

Annotation: two-component sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details PF00512: HisKA" amino acids 246 to 308 (63 residues), 39.9 bits, see alignment E=3.6e-14 PF02518: HATPase_c" amino acids 363 to 469 (107 residues), 91.9 bits, see alignment E=3.5e-30

Best Hits

KEGG orthology group: None (inferred from 95% identity to rsl:RPSI07_mp0454)

Predicted SEED Role

"Sensory histidine kinase QseC" in subsystem Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (492 amino acids)

>RALBFv3_RS21135 two-component sensor histidine kinase (Ralstonia solanacearum IBSBF1503)
MKCSVPAILRVRSLSFRLYVLILLALVLMLLVQLAIAYLEISRSNSRQVVSDLRMSAQAY
ADLTALSMDDEPRREEFLRRLTDIRLGLSQPDLLPGEFRYVLCDRDKRVIAALPGAHTMP
CGTAHGKVVEILLEGVPWRAYTVDSIDGTLTATVAQPMSAYDRAIRDLYREVALTIAFLA
AVLMVMVGWAANQGLKPLRTLTGQVEARDTADLEPVQSVEHAELKPLVQALNGLFERVRR
SIDADRRFFADAAHELRTPLAAIQAQAYVVSHSDSEDDRSTALREFDRGISRATQSLSKL
LALARLDARRVEAQLAQGALSDLAGCARSGVIQQASRAERRNVTLSYDGASQAWVPVSHE
DAATLVENLLDNAVRETPDGGEVHVHVQRLEIGGRPMIELRIEDTGPGIPPEERERVFER
FYRPRDSQSQGSGLGLAIVRRIVELGKGSVAIDDGRGGKGCAVVIRLPALTSTPEPLDPQ
DEPPGTADMSPG