Protein Info for RALBFv3_RS20710 in Ralstonia solanacearum IBSBF1503

Annotation: lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF02625: XdhC_CoxI" amino acids 15 to 75 (61 residues), 72.6 bits, see alignment E=2.1e-24 PF13478: XdhC_C" amino acids 168 to 310 (143 residues), 134 bits, see alignment E=4.3e-43

Best Hits

KEGG orthology group: K07402, xanthine dehydrogenase accessory factor (inferred from 84% identity to rsl:RPSI07_mp0939)

Predicted SEED Role

"XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>RALBFv3_RS20710 lipoprotein (Ralstonia solanacearum IBSBF1503)
MDSVDLQVLTAARRWATEGRRFALVTVARTWGSAPRQPGSWLALRDDGLVEGSVSGGCVE
DDLIARMRDGRLCGETGGVPFRLTYGVDKDEAARFGLPCGGTLELVVEPAPDAVLLEALA
DRLAARELVLRHVDLASGDTSLTAAQRGDALAWDGTHLTTVHGPQWRLLIIGAGQVSRYL
AQMAQALDYDVTVCDPREEYGPTWDVPGTRLVSTMPDDTLLSMAPDAHCAVVALTHDPKL
DDMVLLEALRSPAFYVGALGSHLNSTRRRERLAQYFDFTAAELARLHGPVGLPIGSRTPP
EIAVAILAEMTAVKNGASTPVARTTAAPTQNSAACALP