Protein Info for RALBFv3_RS20640 in Ralstonia solanacearum IBSBF1503

Annotation: phenylacetate-CoA oxygenase/reductase subunit PaaK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 TIGR02160: phenylacetate-CoA oxygenase/reductase, PaaK subunit" amino acids 5 to 361 (357 residues), 451.8 bits, see alignment E=6.9e-140 PF00970: FAD_binding_6" amino acids 9 to 112 (104 residues), 40.9 bits, see alignment E=3.3e-14 PF00175: NAD_binding_1" amino acids 127 to 234 (108 residues), 62.6 bits, see alignment E=8e-21 PF00111: Fer2" amino acids 279 to 351 (73 residues), 55.3 bits, see alignment E=7.8e-19

Best Hits

KEGG orthology group: K02613, phenylacetic acid degradation NADH oxidoreductase (inferred from 96% identity to rso:RSp0608)

Predicted SEED Role

"Phenylacetate-CoA oxygenase/reductase, PaaK subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>RALBFv3_RS20640 phenylacetate-CoA oxygenase/reductase subunit PaaK (Ralstonia solanacearum IBSBF1503)
MTPQFHPLRVAEVRGETADTISLRFDVPDDLRDAYRFTQGQFLTLRVPSGEAGQGELRRS
YSICCAVQDYDAHGELRVAVKRVDAGVFSNHLHDRIRVGQTLDVLPPDGRFYVPLAAESA
RHYVAFAAGSGITPVLSLIKTTLAAEPHSRFTLVYGNRTVDSIIFAEALEDLKDRYLDRF
ALYHVLSRQPQEIALFNGRLDGDKARAFLDTLIPPDEIDAAFVCGPSTMIDAVEAALLER
GVPRERVHAERFGVPVGDAGAKPRRPSAAAGEVALTVVLDGKSHPVPMAGDAKVLDSALA
AGLDLPYACKGGVCCTCRAKVLEGRVEMEKNFTLEDWEIRQGFVLTCQARPLTQRVVVSY
DER