Protein Info for RALBFv3_RS19845 in Ralstonia solanacearum IBSBF1503

Annotation: TIGR03364 family FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 17 to 34 (18 residues), see Phobius details TIGR03364: FAD dependent oxidoreductase TIGR03364" amino acids 15 to 381 (367 residues), 425.5 bits, see alignment E=9.1e-132 PF00890: FAD_binding_2" amino acids 16 to 142 (127 residues), 20.6 bits, see alignment E=4.7e-08 PF01266: DAO" amino acids 16 to 380 (365 residues), 120.3 bits, see alignment E=2.9e-38 PF13450: NAD_binding_8" amino acids 19 to 51 (33 residues), 25.3 bits, see alignment (E = 3e-09)

Best Hits

KEGG orthology group: None (inferred from 86% identity to rpi:Rpic_4472)

Predicted SEED Role

"FIG00350678: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>RALBFv3_RS19845 TIGR03364 family FAD-dependent oxidoreductase (Ralstonia solanacearum IBSBF1503)
MVHAPVSHGSPDAVTDVAIVGAGILGLAHAAAALRRGLRVTVFERSEAAVGASIRNFGQM
LVTGQPPGIMLDLARESRALYLDWARQAGFAVRANGALLFARDAAEAAVLDEFMATRAPA
FGYRVGLLRGAALAGLYDGRFARHRAALQGFDDLQLYSREAIPALAAWLAAQGVRFHFGT
LVRHAEDGRLDTTAGPCRAQHVIVCSGHDYQTLCAEPLRALQPQVCRLQMLRVTPEDGLR
LEHAVLTGLSCTHYGAFADLPTAQALATQIVQQRPELQRHGIHLLVSPTPYGDWIVGDSH
DYGQDARPFNAESVDTLMLDLARDTFGTGVRVVERWQGVYGARCRVPGSGAFSVTRVDAR
TTVALMHSGIGMSVGPALAHRHVDVLVEGGALPQWTPPAGIPASTAA