Protein Info for RALBFv3_RS18840 in Ralstonia solanacearum IBSBF1503

Annotation: IMP dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1145 PF08379: Bact_transglu_N" amino acids 6 to 84 (79 residues), 89.6 bits, see alignment 2.6e-29 PF01841: Transglut_core" amino acids 132 to 246 (115 residues), 59.8 bits, see alignment E=4.6e-20 PF09899: DUF2126" amino acids 276 to 1143 (868 residues), 1332.3 bits, see alignment E=0

Best Hits

Predicted SEED Role

"Large protein containing transglutaminase-like domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1145 amino acids)

>RALBFv3_RS18840 IMP dehydrogenase (Ralstonia solanacearum IBSBF1503)
MSIRVALNHVTHYRYDRRVGLSPQVVRLRPAPHCRTPILSYSMRVEPAGHFINWQQDAFA
NYQARLVFPEPTREFKVTVDLVAEMAVYNPFDFFLAPEAEQFPFAYADDLAAELAPYRVK
REPTPRFAAFLAGIDRTPRRTIDFLVELNQRLQHEIRYLIRMEPGVQTPEETLALGSGSC
RDTGWLLVQTLRHLGLAARFVSGYLLQLTPDVKSIDGPSGTEADFTDLHAWCEVYLPGAG
WIGFDPTSGLLAGEGHIPVACTPEPGSAAPISGAVDECEVEFGHAMSITRVLETPRVTKP
YAEADWAGIAEMGAHVDARLAAMDVRLTMGGEPTFVAVRDRDAAEWNTDALGPTKRSYAV
ALMDRLRQRYGAGGFLHIGQGKWYPGEQLPRWALSLYWRADGQPCWSDHALLADERDPGS
YTAEDAQRFIHHVARKLSLDTQCIQPGYEDAWYYLWRERRLPVNVDPFDSRLDDELERAR
LRRVFDAGLPAVTGYVLPLAREHDLPMSGPRWVTGQWFFRDARMVLMPGDSPMGYRLPLD
SLPWVRAADYPWQHVHDPFGPPTPLRGATALRMQYQGDAARAEAPGPAEAVGARAAGPQA
ADRMPAPGESASWIHRTALCVEARDPARAAGPKVEMASFGSGRSLLHVFMPPLTRLDDYL
DLLAAVEATATELKVRIVIEGYPPPRDPRLKLLQVTPDPGVIEVNIHPAANWDELVDHTE
YLYESAHQSYLSTEKFMLDGRHTGTGGGNHFVLGGATPADSPFLRRPDLLASLIAYWHNH
PSLSYLFSGLFIGPTSQAPRVDEARNDQVYELEIAFAELQRQLDRLSASGGAGNGGGQVP
PWLIDRILRNILIDVTGNTHRAEFCIDKLYSPDGPTGRLGLLELRGFEMPPHARMSLVQQ
LLLRALVARFWQTPYTTRLTRWGTGLHDRFLLGTFVQMDFDDVLADLREAGYAFERHWFA
PHFEFRFPQVGELHAGGISLTLRNALEPWHVMGEEGGAGGTVRYVDSSVERLEARVLGLN
DNRHVLTVNGVSLPLQPTGRVSEHVAGVRFRAWSQASSLHPSVGVHAPLTFDLVDTWTGR
SLGGCQYHVAHPGGRNYQTFPVNAYEAESRRRARFFTTGHTPGAMQVPAPERSLEFPFTL
DLRRC