Protein Info for RALBFv3_RS18115 in Ralstonia solanacearum IBSBF1503

Annotation: nodulation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 29 to 29 (1 residues), see Phobius details amino acids 337 to 353 (17 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details amino acids 463 to 482 (20 residues), see Phobius details amino acids 527 to 547 (21 residues), see Phobius details amino acids 854 to 872 (19 residues), see Phobius details amino acids 879 to 898 (20 residues), see Phobius details amino acids 904 to 925 (22 residues), see Phobius details amino acids 950 to 971 (22 residues), see Phobius details amino acids 983 to 1009 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1009 (1006 residues), 1122.9 bits, see alignment E=0 PF03176: MMPL" amino acids 312 to 488 (177 residues), 29.1 bits, see alignment E=7.7e-11 PF02355: SecD_SecF" amino acids 338 to 479 (142 residues), 22.4 bits, see alignment E=1.1e-08

Best Hits

KEGG orthology group: None (inferred from 62% identity to aba:Acid345_2831)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1033 amino acids)

>RALBFv3_RS18115 nodulation protein (Ralstonia solanacearum IBSBF1503)
MNLSATFIARPVATALLTIGVALAGIAAFNLLPVSPLPQVDFPTISVNASLPGASPETMA
ATVATPLERSLGRIAGITEMTSQSSLGSTRVTLQFDLSRDIDGAARDVQAAINASRSLLP
SGLPSNPTYRKVNPADAPIMILGLTSDTKSRGELYDAASTILAQKLSQISGVGQVNIGGA
SLPAVRVELNPTALNKYAISTETVRTVITATNANKPKGMLEAGDRVWTIYANDQARKAEE
YKPLIIAYRNGAPVRLSDVAEVTDSVQDIRNYGSANGKPSVLLIINRQPGANIIDTVDRI
NAILPYLRNTIPAQINLDVMMDRTPTIRASLRDVERTLMLSIGLVIMVVYLFLRNLRATL
IPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENVSRHIENGMRP
MQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLVISLT
TTPMMCARLLKPASEEEPGWFHRKTERFFTLLLDGYRHSLAWALRHSWLTLMILLATVCL
NVYLYIVVPKGFFPQQDVGRLMGFVQADQSISFQAMRTKLADFIHIVQQDPAVDSVVGFT
GGSQINSGQMFIQLKPLADRKLSADQVINRLRGKLAREPGANLFLQAVQDIRIGGRPSNA
QYQYTLQADNLEELRVWEPKIRQALMQIKSLLDVNSDAQDKGLQTALVFDRDKAMALGIS
PKDIDNALNNAFGQRQVSTIYNPLNQYRVVMEAAPQYWQNPEGLQDIYLITSSGAQVPLS
TLSHYGPSNTPLAVNHQGQFAASTLSFNLAPGASLSTATQQIQDAMNRIGVPTTVHGSFQ
GTARAFQDSLSSQPVLILFALITIYIVLGVLYESYMHPITILSTLPSAGVGALLALILTD
TDFSIIALIGVILLIGIVKKNAIMMIDFALEAERSQGMSPADAIFHACVLRFRPILMTTM
AALLGALPLALGHGDGAELRQPLGISIVGGLLVSQILTLYTTPVVYLALDRLRLRRGRRV
KDAPLPALDSQGS